PhytophthoraV1, Main, Exploration, bibRecord, 000767

Gene Profiling in Late Blight Resistance in Potato Genotype SD20.

Identifieur interne : 000767 ( Main/Exploration ); précédent : 000766; suivant : 000768

Gene Profiling in Late Blight Resistance in Potato Genotype SD20.

Auteurs : Xiaohui Yang [République populaire de Chine] ; Xiao Guo [République populaire de Chine] ; Yu Yang [République populaire de Chine] ; Pei Ye [République populaire de Chine] ; Xingyao Xiong [République populaire de Chine] ; Jun Liu [République populaire de Chine] ; Daofeng Dong [République populaire de Chine] ; Guangcun Li [République populaire de Chine]

Source :

International journal of molecular sciences [ 1422-0067 ] ; 2018.

RBID : pubmed:29891775

Descripteurs français

English descriptors

Abstract

Late blight caused by the oomycete fungus Phytophthora infestans (Pi) is the most serious obstacle to potato (Solanum tuberosum) production in the world. A super race isolate, CN152, which was identified from Sichuan Province, China, could overcome nearly all known late blight resistance genes and caused serious damage in China. The potato genotype SD20 was verified to be highly resistant to CN152; however, the molecular regulation network underlying late blight resistance pathway remains unclear in SD20. Here, we performed a time-course experiment to systematically profile the late blight resistance response genes using RNA-sequencing in SD20. We identified 3354 differentially expressed genes (DEGs), which mainly encoded transcription factors and protein kinases, and also included four NBS-LRR genes. The late blight responsive genes showed time-point-specific induction/repression. Multi-signaling pathways of salicylic acid, jasmonic acid, and ethylene signaling pathways involved in resistance and defense against Pi in SD20. Gene Ontology and KEGG analyses indicated that the DEGs were significantly enriched in metabolic process, protein serine/threonine kinase activity, and biosynthesis of secondary metabolites. Forty-three DEGs were involved in immune response, of which 19 were enriched in hypersensitive response reaction, which could play an important role in broad-spectrum resistance to Pi infection. Experimental verification confirmed the induced expression of the responsive genes in the late blight resistance signaling pathway, such as WRKY, ERF, MAPK, and NBS-LRR family genes. Our results provided valuable information for understanding late blight resistance mechanism of potato.

DOI: 10.3390/ijms19061728
PubMed: 29891775
PubMed Central: PMC6032139

Affiliations:

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<front><div type="abstract" xml:lang="en">Late blight caused by the oomycete fungus <i>Phytophthora infestans</i>
 (<i>Pi</i>
) is the most serious obstacle to potato (<i>Solanum tuberosum</i>
) production in the world. A super race isolate, CN152, which was identified from Sichuan Province, China, could overcome nearly all known late blight resistance genes and caused serious damage in China. The potato genotype SD20 was verified to be highly resistant to CN152; however, the molecular regulation network underlying late blight resistance pathway remains unclear in SD20. Here, we performed a time-course experiment to systematically profile the late blight resistance response genes using RNA-sequencing in SD20. We identified 3354 differentially expressed genes (DEGs), which mainly encoded transcription factors and protein kinases, and also included four NBS-LRR genes. The late blight responsive genes showed time-point-specific induction/repression. Multi-signaling pathways of salicylic acid, jasmonic acid, and ethylene signaling pathways involved in resistance and defense against <i>Pi</i>
 in SD20. Gene Ontology and KEGG analyses indicated that the DEGs were significantly enriched in metabolic process, protein serine/threonine kinase activity, and biosynthesis of secondary metabolites. Forty-three DEGs were involved in immune response, of which 19 were enriched in hypersensitive response reaction, which could play an important role in broad-spectrum resistance to <i>Pi</i>
 infection. Experimental verification confirmed the induced expression of the responsive genes in the late blight resistance signaling pathway, such as <i>WRKY</i>
, <i>ERF</i>
, <i>MAPK</i>
, and NBS-LRR family genes. Our results provided valuable information for understanding late blight resistance mechanism of potato.</div>
</front>
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<Month>10</Month>
<Day>08</Day>
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<DateRevised><Year>2018</Year>
<Month>11</Month>
<Day>14</Day>
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<PubDate><Year>2018</Year>
<Month>Jun</Month>
<Day>11</Day>
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<ArticleTitle>Gene Profiling in Late Blight Resistance in Potato Genotype SD20.</ArticleTitle>
<ELocationID EIdType="pii" ValidYN="Y">E1728</ELocationID>
<ELocationID EIdType="doi" ValidYN="Y">10.3390/ijms19061728</ELocationID>
<Abstract><AbstractText>Late blight caused by the oomycete fungus <i>Phytophthora infestans</i>
 (<i>Pi</i>
) is the most serious obstacle to potato (<i>Solanum tuberosum</i>
) production in the world. A super race isolate, CN152, which was identified from Sichuan Province, China, could overcome nearly all known late blight resistance genes and caused serious damage in China. The potato genotype SD20 was verified to be highly resistant to CN152; however, the molecular regulation network underlying late blight resistance pathway remains unclear in SD20. Here, we performed a time-course experiment to systematically profile the late blight resistance response genes using RNA-sequencing in SD20. We identified 3354 differentially expressed genes (DEGs), which mainly encoded transcription factors and protein kinases, and also included four NBS-LRR genes. The late blight responsive genes showed time-point-specific induction/repression. Multi-signaling pathways of salicylic acid, jasmonic acid, and ethylene signaling pathways involved in resistance and defense against <i>Pi</i>
 in SD20. Gene Ontology and KEGG analyses indicated that the DEGs were significantly enriched in metabolic process, protein serine/threonine kinase activity, and biosynthesis of secondary metabolites. Forty-three DEGs were involved in immune response, of which 19 were enriched in hypersensitive response reaction, which could play an important role in broad-spectrum resistance to <i>Pi</i>
 infection. Experimental verification confirmed the induced expression of the responsive genes in the late blight resistance signaling pathway, such as <i>WRKY</i>
, <i>ERF</i>
, <i>MAPK</i>
, and NBS-LRR family genes. Our results provided valuable information for understanding late blight resistance mechanism of potato.</AbstractText>
</Abstract>
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<affiliations><list><country><li>République populaire de Chine</li>
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Gene Profiling in Late Blight Resistance in Potato Genotype SD20.

Gene Profiling in Late Blight Resistance in Potato Genotype SD20.

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